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A Functional Genomics Approach Using Radiation-Induced Changes in Gene Expression to Study Low Dose Radiation Effects In Vitro and In Vivo

Albert J. Fornace
fornace@nih.gov
National Cancer Institute, National Institutes of Health

Why This Project:

Radiation exposure can influence changes in gene expression. This project will examine radiation-induced up and down regulation of gene expression as a function of radiation dose, type, dose-rate, tissue type and exposure conditions. This will provides basic data to determine how radiation alters gene expression and will lead to understanding the genes and pathways involved in the induction and repair of radiation-induced damage. This evaluation is essential in development of models to extrapolate risk from high doses where disease is observed to lower doses where it is difficult to determine risk or damage.

Project Goals:
  1. Determine the number and types of genes that change in their expression following low and high doses of radiation.
  2. Determine if the biological mechanisms associated with radiation induced damage are similar after exposure to high and low doses.
  3. Characterize the changes in gene expression as a function of tissue type, exposure conditions and radiation type.
Experimental Approach:

Changes in stress-responsive genes weremeasured after low doses of radiation using modern molecular fluorescent cDNA microarray hybridization techniques that rapidly and accurately measure many samples taken at the same time. The genes, CDKN1A and GADD45 increased their expression of protein, as a linear function of the dose delivered. The increase in gene expression measured with the gene chips was compared to the increase using standard gene expression techniques and was shown to be closely related. These data provided the necessary positive controls to extend the studies to other experimental conditions. The expression of multiple genes is being monitored using this chip technology. Changes are being measured in multiple tissues of animals exposed to radiation in vivo. The changes in gene expression are being characterized as a function of time after exposure, dose-rate and radiation type. These studies are being expanded to using human tissues and cells to help extrapolate the responses from animals to humans.

Expected Outcomes:
  1. Evaluation of the role of dose on gene expression.
  2. Determination if the mechanism of response of cells to high and low radiation dose is the same.
  3. Conversion of the changes observed in gene expression into functional changes of biological significance.
  4. Development of a biological marker of radiation exposure and dose using the microarray technique.
 
 



                   
                   
                   
 

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